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rs48498566 SNP Detail
Summary
  • ID
    rs48498566
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:154064973 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          TTCTCTGTAT GCTCCCTGTC TCTCCCAACT TGCATTCTGG
    AACATTCACG TCTCTCAGTC TATGTTGAGC CCTCTAGCCA GCAAGCTTTT TGCTATAATA
    Y
    TTCCTGCCTG GGCTGTCTGA GGCTTATCCT GCTAATCTTT TGCTTCCCAC ATCCCTTCCT
    GTCCTTCAGA ATCACTGGTC TCTCACTGGT GTCTTGTAC                       
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
ss145757289 ENSMUSSNP1376623 ENSEMBL ENSEMBL_Sanger f SNP C C T
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
rs48498566 SNP C C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:154064973 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr420823 regulatory region 420823 111 bp distal
Rr420824 regulatory region 420824 887 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory