rs48500457 SNP Detail

Summary

• ID
  rs48500457
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:32386786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAAGGGTGC TAAAGGACGT CCCCTCCTCA AGGCATCACC
  CCTTCCCACC TGCTTGTCGC CACTAACTGC ATCCCCTTTC AAAGGTCCAG ACTCAGCAGC
  R
  TCCAGTCCCC ACCTCTCAAT GTTTATTAAG TCCGAGCTCT TGTAGCCATC CCTTTGATAT
  GCTCTTTATG CACCTCCCCT GGGCTTCTGT CATCATTAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61365481	NES16749236	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	A	G	G	A	A	A	A
ss136246220	ENSMUSSNP4871135	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48500457					SNP	A	A	A	A	A	G	A	G	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61365481	NES16749236	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32386786 () rs orientation: forward

Symbol	Name	Function Class
Fli1	Friend leukemia integration 1	within coordinates
Gm38292	predicted gene, 38292	1843 bp downstream