rs48501101 SNP Detail

Summary

• ID
  rs48501101
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:37458949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCC CTCCATGCTT TCTGACCATG
  T
  CACTCTCTTG AAACATTCAA TTAAT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss144483846	ENSMUSSNP834799	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322602138	CHEV_8_38054849	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48501101					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:37458949 () rs orientation: forward

Symbol	Name	Function Class
AI429214	expressed sequence AI429214	1809 bp upstream
Cpgi20273	CpG island 20273	1731 bp proximal
G630064G18Rik	RIKEN cDNA G630064G18 gene	within coordinates
Gm63701	predicted gene, 63701	within coordinates
Tssr76927	transcription start site region 76927	1756 bp upstream