rs48501440 SNP Detail

Summary

• ID
  rs48501440
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:10295514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GGCTTGAGAT GCCTCCACAG TGGGTCTCAG TTCTACCAGT
  ACTCTAGAGA CCAGGAGATG TAAACAGCCA GGTGTTTCCT CTGTCTCCCT AAACATGCTT
  R
  TTATTACCAG AGAGATGTCT CCCTAAACAA GCTTATTATT ACCAGAGAGA CAGCTTACTC
  AGAATGATTA TCAACTGAAC AGAGTGTAAT TTGGCTTCAG A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147830264	ENSMUSSNP6980478	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs48501440					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:10295514 () rs orientation: forward

Symbol	Name	Function Class
Speer1c	spermatogenesis associated glutamate (E)-rich protein 1C	within coordinates