rs48502417 SNP Detail

Summary

• ID
  rs48502417
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70988482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTATGGAT TTTTTTTTTT
  TAAGTTTTAT TCTGAAAGTA GTGCAAAGTC CAAAGTTAGA GCATGAACAT TCCTTGTAAG
  GTCATGATGT GTCAGAATTC GAAGTAAGAG GATCAGAAGA GGGTTGGAGA TGCAGGTGAC
  AGAGGGTGGG TTTCAAACAC AATAGGCTTT CCCTTGCCTT CTAAACCACT GTACTGTTTG
  S
  GTCTGGCGCC CTCCAGTGGC ACTCAGAGTC CTAGAGCCGA GACTCATATA TCCCTTCTTA
  AACCCTGTTT TCAGTAGGAG GAATTCAGTT CTTGTAAGTT TATCCTGATG AAGGAAGCGA
  TAATGAGGGT TTCCGAAGTG TCAATTGTTT AATCCTGTAC ATATTCTAAA AATCTGCCGA
  AAAGATTAAA CCTGGCTCGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52651871	NES15472149	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		C	G	G	C		G
ss324417466	CHEV_13_70979241	CHEVERUD	SCREENING_POP	f	SNP											C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48502417					SNP	G	G	G	G	G	G	G	G	G	G	C	C	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52651871	NES15472149	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70988482 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	within coordinates
Cpgi5821	CpG island 5821	874 bp proximal
Gm36529	predicted gene, 36529	87 bp upstream
Rr482298	regulatory region 482298	208 bp distal
Rr482299	regulatory region 482299	within coordinates
Rr482300	regulatory region 482300	3 bp proximal
Rr482301	regulatory region 482301	98 bp proximal
Rr482302	regulatory region 482302	326 bp proximal
Rr482303	regulatory region 482303	1359 bp proximal
Rr482304	regulatory region 482304	1438 bp proximal
Tssr123158	transcription start site region 123158	1340 bp downstream
Tssr123159	transcription start site region 123159	1366 bp downstream
Tssr123160	transcription start site region 123160	1399 bp downstream
Tssr123161	transcription start site region 123161	1427 bp downstream