rs48502639 SNP Detail

Summary

• ID
  rs48502639
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31895992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTG AAGCGTTTGT CATGTGCATC
  Y
  TAGCTGGCGG TAGTTTCTGG AACGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	WSB/EiJ
ss60257460	NES15753507	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C		T	C		T	T
ss145462593	ENSMUSSNP3321724	ENSEMBL	ENSEMBL_Sanger	f	SNP	T						C			C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	WSB/EiJ
rs48502639					SNP	T	T	T	T	T	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60257460	NES15753507	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31895992 () rs orientation: forward

Symbol	Name	Function Class
Cryaa	crystallin, alpha A	913 bp upstream
D17Rua3	DNA segment, Chr 17, Rutgers University 3	1497 bp proximal
Gm50222	predicted gene, 50222	within coordinates
Tssr143680	transcription start site region 143680	906 bp upstream
Tssr143681	transcription start site region 143681	1906 bp upstream
Tssr147305	transcription start site region 147305	1091 bp downstream
Tssr147306	transcription start site region 147306	1113 bp downstream
Tssr147307	transcription start site region 147307	1163 bp downstream
Tssr147308	transcription start site region 147308	1480 bp downstream