rs48502651 SNP Detail

Summary

• ID
  rs48502651
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:166228001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCATACTT TTAATTTTTG
  ATCTGGAGCT CATCAGAAGT GAACCACAAG TTTAACAAAT AACCAGCCTA AGTCCTTATC
  TATGTCCCAT TAACACCGAT CACGAAGGCT AATTCTCATG GCACTGTGTA TAGCAGAGGT
  CCTTGGCCCC TTTGCAGATG GAAGCAAAGA GGCCATAGAT GTTATGGGAT AGATGCAAGG
  Y
  TGCCAAGAAG TGACAGAACT TTCAGTGTGA TCTGAATACA AGTACTAAGC CTGAAGCAAA
  TGACACTGGG GCCATGTTTG CATGAAGCAG TGTTTGTAAG TGAGCTTGGT GATGTAGTGA
  CATAGCCCTG TAATCCCAGC TATTTGGGAG GCAGAGGCAG GGGGATCACA AATTCAATGC
  TGCTACACTA TGCAGTTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60340743	NES15843706	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48502651					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60340743	NES15843706	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:166228001 () rs orientation: forward

Symbol	Name	Function Class
Pogk	pogo transposable element with KRAB domain	Intron
Rr422579	regulatory region 422579	998 bp proximal
Rr422580	regulatory region 422580	1646 bp proximal