rs48503386 SNP Detail

Summary

• ID
  rs48503386
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161345586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATACAGAAG AAATCCCAAA AGTGATGCCA
  AGAAGCCTCC GATCTGTCCT TGCCATTGAC TAACCAAGCT TGGTTAGTGC CCCTCAGTTT
  TGGCACCGAT CTCTATAAAA GAAATAATTA TAGTAATTTT ttaaatgaac aaattaaatt
  W
  attttttcac agttctagga gtgagcaagt ctaaaccaaa acatatttgt ctcaatgtgc
  ttcctagatg gtcatttctg ctgtaaactc atgtggtaaa agtggtaagg tacttgtttg
  ggccttttct TGAGACATAT AGTTTTGAAA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss145915597	ENSMUSSNP906948	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320080968	CHEV_1_163448148	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48503386					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161345586 () rs orientation: forward

Symbol	Name	Function Class
Gm31815	predicted gene, 31815	within coordinates
Rr421813	regulatory region 421813	326 bp distal