rs48503635 SNP Detail

Summary

• ID
  rs48503635
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34614529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATGCTGGGG AACCGGGTAG GCGTTGGGAT GAACAAAACC
  AGGTGTAGTT TCTGCCCTCG GGTTGTTTGC AGACTAGAAA GAGAAAATAC TCAAAAGAGA
  R
  CAAAAGTGCG ACGAAGATAA TGGATAGCAA GAGGGATCCA TCTGCACTCC AAAATATACC
  ACTGGGGCGG CGGAAAGATG ACTGTAGCTG AAATCAATT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60592088	NES16319606	PERLEGEN	MM_PANEL2	f	SNP		G	G	A		A	G	A	A		G
ss149094961	ENSMUSSNP2295360	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss322575462	CHEV_8_35210429	CHEVERUD	SCREENING_POP	f	SNP					G					G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48503635					SNP	G	G	G	A	G	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60592088	NES16319606	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34614529 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20243	CpG island 20243	180 bp distal
Leprotl1	leptin receptor overlapping transcript-like 1	636 bp upstream
Rr661963	regulatory region 661963	353 bp distal
Rr661964	regulatory region 661964	within coordinates
Rr661965	regulatory region 661965	1757 bp proximal
Tssr76862	transcription start site region 76862	1038 bp downstream
Tssr76863	transcription start site region 76863	1008 bp downstream
Tssr76864	transcription start site region 76864	991 bp downstream
Tssr80896	transcription start site region 80896	1214 bp upstream
Tssr80897	transcription start site region 80897	788 bp upstream
Tssr80898	transcription start site region 80898	657 bp upstream
Tssr80899	transcription start site region 80899	623 bp upstream
Tssr80900	transcription start site region 80900	607 bp upstream
Tssr80901	transcription start site region 80901	565 bp upstream
Tssr80902	transcription start site region 80902	362 bp upstream
Tssr80903	transcription start site region 80903	309 bp upstream