rs48503710 SNP Detail

Summary

• ID
  rs48503710
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:53519855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTCCTTG CCGGTTGCTC
  TGGCATTGTG GGGTCTTGTC CTTCATTCAG ACCGTGAAAG CTTAAGCGTG AAAGAGATAT
  GCCTATGGTA TTTGATAGAT ATTGCTGCCC TTATGACACC ACTGAAGTTC AAACTGTGAC
  AAAGAGTCCC TTTCTCTTAA ATAGAGCACC CCAGATGTGC ATTCGGCTCT GATTTAGTGG
  Y
  GCTGGGTGTT GGTGCCAGGC CCCTTATACT TCCTACAGTT CCGTCTCCCA CTGAAAGGAG
  ATGCTGAAGA CCAGTTAGGT GGCTGGGGCT TGCTTCTATA GAGTGCCTGT GCGCTGGCTC
  TCTGTTCCTT TGGCAACACA GTGATGATTG AAAGTAGACT CACTCTGGAG AAGGTTGAAG
  CGGCCTGAGG AATTGCTAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss63284361	NES17498680	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48503710					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63284361	NES17498680	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:53519855 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11064	CpG island 11064	1229 bp distal
Dusp5	dual specificity phosphatase 5	Intron
Gm50394	predicted gene, 50394	1769 bp upstream
Rr549549	regulatory region 549549	1279 bp distal
Rr549550	regulatory region 549550	within coordinates