rs48504154 SNP Detail

Summary

• ID
  rs48504154
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:102336188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATCAAAC ATAAATACTT
  GGTCAAAAGT TTGACTCATT AACTGCTCAG ACCTGTCCAA CCTGTAGCTG AGGGCAGCTG
  TGAATACAGG CCAAACACAA AACTGTAAAA TGTTAAGTTT CTTTATGCGA TTTTGTTCTC
  CAGAGTGAAC TTTGTAGACT ACAATATCAA AAGGTTGCAC CTAGCAACCA GTGCCTCCAC
  G
  GTCCTCAGGG CCGCGAAGGG AGGGGGAAGA GCCTGGAAGC GGCAGAAACC AGCCTCGGGT
  CTGGAAGCAG TGGCGGTCCG TGCCTTCCTG ACCTTCGGGC ACTAGGCAGT TCCCCAGGGC
  GGTGGGATTG GGAACAGGGG AGGGTAAAGA GGGCAGGACC TGTGTTGTCC TCCAAAGAGG
  TCTGCTGTCG CCTCCTTCTC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145571406	ENSMUSSNP2476751	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48504154					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:102336188 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19528	CpG island 19528	within coordinates
Gm45527	predicted gene 45527	762 bp upstream
Rr652623	regulatory region 652623	within coordinates
Rr652624	regulatory region 652624	279 bp proximal
Trim68	tripartite motif-containing 68	within coordinates
Tssr73953	transcription start site region 73953	271 bp downstream