rs48504506 SNP Detail

Summary

• ID
  rs48504506
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:57167956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAACTTTG GGGTGGAGGC
  TGTTTCCGAC TCTGGCATCT CTGCTAAGAG CACTGGAATA GACTGGGGTA TCTCCCTGGA
  GTCTGAGTCC AAGGATGCTG GGGCCAACAA GACAGACTGG GGCGATGATG CAGCTGCTTT
  GGAGATCACC ATGCTGGAGA CAGGCGCCGA AGCTCCAGAG GGTGTTGCTC GGGCTCAGAC
  R
  CCCTGACTCT TCTCGAATAC CCTGAGACTC GGAGTGAGTT CATTCATTGA TGAGCTCATT
  GAGCTTGAGA TCTTCTTGTC ACAGAGAGCA GTAGAGATGA GCAAGGAGGC CAACAGCCTG
  TCCGTGAGCC AGTTCCAGCT GGCTCCTGCC ATCTTTCAAA GAGAAGATGC TCAACCTGGT
  GTCCACACTG CAGCAACTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52318220	NES15288247	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G		G	G	G		A
ss323316479	CHEV_10_57011666	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48504506					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52318220	NES15288247	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:57167956 () rs orientation: forward

Symbol	Name	Function Class
Gm7001	predicted gene 7001	within coordinates
Gm66529	predicted gene, 66529	542 bp upstream