rs48504619 SNP Detail

Summary

• ID
  rs48504619
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:45863332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCTAACT CCTGGAGTGA
  CAGGCTTCCT GTCAGAGTAT AGGCACTTTG GTTGAGGCTG TCGGTGGCTC AATGCTGACC
  TCATATGGTC AATGCAGGGA TTGCCACACA CCTGTTAGGG CTCAGGCCCA TACACCCAGT
  CGGGTTGAAA TAGTTATCCT TAAATGTGGC TTCTTTGTGA ATTAGAAAAG TGGTCCCTTG
  Y
  ACTCCTGTAA GTCGGGTTCC CCCATCGATG ATGTTTAGAC CTTGGTAAGA GTTTCAATGA
  AGAAAACTTA TAAGACATAG GATTAGGTCA AAAAAAGCAA GTTCTGTTTT TCTAACTATG
  GGTTCTTGGG CAAGCCAGCT AACTTCTCTG GGCCTCGGGC AGGTTTGGTT TTTTTTTGTT
  TTGTTTTGTT TTTTTGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60259853	NES15755809	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48504619					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60259853	NES15755809	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45863332 () rs orientation: forward

Symbol	Name	Function Class
Rr405301	regulatory region 405301	within coordinates
Rr527425	regulatory region 527425	within coordinates
Rr527426	regulatory region 527426	263 bp proximal
Rr527427	regulatory region 527427	1972 bp proximal