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rs48504889 SNP Detail
Summary
  • ID
    rs48504889
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:130631844 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGACTATAAC ATTGTTTCAT
    CAAGATACAA CTGTGTACCC AGTAATCCCA GCACTATGAA GTTGGGAGCA GGAGGACCAG
    GAGTTTAAGG TCATCCTCTG TTATACAGTG AGTCAAAGGC CAGCATTGAT TCCTTGACAC
    TGTCTCAAAA ACACAAAGCA AAACACATTT CCTAAGGCAA TGTTCCCACA GGTCTCCGTG
    Y
    TTTCTTCCTT CAGCATAACA TTTTACTATA CCCCACACCA GGCAAGCCCT CACTGTTATG
    ATGTCTCACA CTGATCAGAC ATTTCCTCTT GAGTGAGGCA AACTTTAAAA TTTATTAAAA
    CTGATGACAC ATCTCCAAGG GATATCCTAC AGCATTCTAG TTCCAATTTG CTAAATCTGG
    AGCAGCGGTT CTCAACTAGA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
MSM/Ms
ss145474335 ENSMUSSNP4168091 ENSEMBL ENSEMBL_Sanger f SNP C C C T
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
MSM/Ms
rs48504889 SNP C C C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:130631844 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm29427 predicted gene 29427 Intron
Pfkfb2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 Intron
Noncoding-Transcript-Variant
Rr417945 regulatory region 417945 153 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory