rs48504907 SNP Detail

Summary

• ID
  rs48504907
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97274109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTAGAAAT AAATAGAAAT
  AGTTGAGTTG AGCTAGCATT GTAAGGATTT GGATGTTTCG AGAATAGTGG GAAAAGCCAT
  TTATGAAAAA TAAAAATGAC TCGAGCCAGC CTTGGGGAAG GAGTTTCCTT CCACCCAGTC
  ATATATTTCC ATGCAGAAGT GAAGTTCTGA ACACCAAGAG CAGACATTCC AGTCCACAGC
  Y
  AGTATTTACC TTGAGGAAGA CTGTCCAAAG GTCAAGAGGG AACGGTCTTA GGAATTGTCA
  GTTTGGTGTG AGGATCAGGA ACCTTGGAGA GTGTGGAAAG CTATTGTTAT TCCTCCCTTC
  CCCCACTGAA GAACTTTACA CACCTGAATG CCTGGAGCTG GGGACTCCCG GGTAGAGAAT
  GGGCTGTTTT AAAATGTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss63608384	NES17040123	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48504907					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63608384	NES17040123	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97274109 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7620	CpG island 7620	612 bp proximal
Pced1b	PC-esterase domain containing 1B	within coordinates
Rr391162	regulatory region 391162	within coordinates
Tssr132866	transcription start site region 132866	460 bp upstream
Tssr132867	transcription start site region 132867	930 bp upstream
Tssr132868	transcription start site region 132868	952 bp upstream