rs48505448 SNP Detail

Summary

• ID
  rs48505448
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137638858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG GGAGCAGCAG CTACAAAGGA
  Y
  TTGGCGGAGA ATGAGCAGCT CAGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147625421	ENSMUSSNP5718907	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss321368864	CHEV_4_137467462	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48505448					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137638858 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15141	CpG island 15141	1748 bp proximal
Ece1	endothelin converting enzyme 1	within coordinates
Rr602772	regulatory region 602772	1679 bp distal
Rr602773	regulatory region 602773	1508 bp distal
Rr602774	regulatory region 602774	618 bp distal
Rr602775	regulatory region 602775	708 bp distal
Rr602776	regulatory region 602776	1321 bp proximal
Tssr39791	transcription start site region 39791	1940 bp upstream
Tssr39792	transcription start site region 39792	2000 bp upstream