rs48505888 SNP Detail

Summary

• ID
  rs48505888
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:120953691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACCTCGCAG AGCATCAAAT TAGTTACACA ACAGGTAGAA
  ACTAGATCTA GAGAAAACAC TTGGAGCTCT TATCAACAAA GAGAGTCCAA AAAGAAACAT
  Y
  CCTCCCTCCT TTCCTTTCTC TTTATTTTTC ATTCTCTTTT TCTTCTTTCT GTTCCAATTG
  TCCATGCCTA TATGAATCTC TTGAAACAGG GAATACAGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147379943	ENSMUSSNP6142969	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss320481928	CHEV_2_120948946	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48505888					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120953691 () rs orientation: forward

Symbol	Name	Function Class
D2Ertd616e	DNA segment, Chr 2, ERATO Doi 616, expressed	1701 bp distal