rs48507802 SNP Detail

Summary

• ID
  rs48507802
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:40520072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGGAAAA TTATTCCTGT
  GTGTTCGATA GGCCTGCAAT ATATCTTCAA TCCTTTAATC TAAAAAAAGT TAAAGGCCTT
  ATTAATTTGA AGAAGATGAT GATGATGATA ATAATAACAA TAATATTTTA TGAGTTCTGT
  GATGTATTTC TGATTTTCCG TGTTGTTGAG GATCTGGCTA CTCGTTTAAA ACTAATTATC
  M
  TGTAATTTTA GTATATTGCT TTAGTATTAC CCTTACCTCA TAGGTACCCT ACATGCAAGT
  CAGAATTTCT TTTTGGTGTA GTTTAAAAAT AAATCTTATC ATACAACTTG TCCTTGAGAT
  TGGGGGCAGG CTATACATAG CTTGCTACAG TTGATTATTC AATATGCATA ATATAGTACA
  CTCACACTCC CTGCCTCTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147693600	ENSMUSSNP6983820	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48507802					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:40520072 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7065	CpG island 7065	450 bp distal
Gm63080	predicted gene, 63080	524 bp upstream
Rr406269	regulatory region 406269	1190 bp proximal
Rr501588	regulatory region 501588	1631 bp distal
Rr501589	regulatory region 501589	1068 bp distal
Rr501590	regulatory region 501590	567 bp distal
Rr501591	regulatory region 501591	815 bp proximal
Tssr4586	transcription start site region 4586	1374 bp downstream
Tssr131170	transcription start site region 131170	1785 bp downstream
Tssr131171	transcription start site region 131171	1755 bp downstream
Tssr131172	transcription start site region 131172	1672 bp downstream
Tssr131173	transcription start site region 131173	1622 bp downstream
Tssr131174	transcription start site region 131174	1594 bp downstream
Tssr131175	transcription start site region 131175	1451 bp downstream
Tssr131176	transcription start site region 131176	1410 bp downstream
Tssr131177	transcription start site region 131177	1355 bp downstream
Tssr131178	transcription start site region 131178	1319 bp downstream
Tssr131179	transcription start site region 131179	1510 bp upstream
Zfpm2	zinc finger protein, multitype 2	within coordinates