rs48507886 SNP Detail

Summary

• ID
  rs48507886
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:110434550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAGCCGCG GCCGGAGCAA
  GCTTGGGCGG GCGCGGTGTC CGGGGGTTCA GGGGTGGGGA AAACAGCGGG CCCGGCGCGC
  GGCGCGGAGG ACAGGGCGGG CTCCCGTCTT CGCCCTGTGT GGTTTCCGTA GTTTTTATTG
  AGATGCTAAA CTCAACTCCG TGGCCCAGGC TGCTTCTCTA GAAATATCTG TGCCTGCCCT
  R
  TGACTTGACT AGGGGTGAAC ATCTATTCTC ATCAGACAAG AAGGGAACGG GGAAAGTAAA
  GGAAGATTCT GTCTAGACCA GCTCGGCGAA GTAAACCAAT TTATTAAACC AAAAGCCGAA
  ACCCTTACGC ATCACATCAG CAAGAGATTC TAGAGTATGG TGACAAAGGA AACTGATGTG
  GATATCGTAT ATAGAGATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61218619	NES16716938	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48507886					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61218619	NES16716938	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:110434550 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16226	CpG island 16226	within coordinates
Pole	polymerase (DNA directed), epsilon	within coordinates
Pxmp2	peroxisomal membrane protein 2	514 bp upstream
Rr399252	regulatory region 399252	1876 bp downstream
Rr616864	regulatory region 616864	509 bp distal
Rr616865	regulatory region 616865	333 bp distal
Rr616866	regulatory region 616866	within coordinates
Tssr47885	transcription start site region 47885	293 bp downstream
Tssr52499	transcription start site region 52499	656 bp upstream
Tssr52500	transcription start site region 52500	632 bp upstream
Tssr52501	transcription start site region 52501	529 bp upstream
Tssr52502	transcription start site region 52502	507 bp upstream