rs48508524 SNP Detail

Summary

• ID
  rs48508524
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91051839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGAGGGG ACCCTGAGCT
  CAGGGAATTT CCCTGGTCCC CGGGCTTTTC CAGACATCGT GCATAAAAGG AGCTCTCGGG
  ACCTCAGAGC CCCAGACTGC GCCTCAGTGC CTCCAACAAG CTTCCTCGGG CACTCCAGAC
  TCCAGCCACA CTTCAGCCTA GCGCCATGGC CCCTCCCACC TGCCGGCTCC TCAGTGCTGC
  R
  CTGGTCCTGC TGCTGCTGCT GGCCACCAAC CACCAGGCTA CAGGTGGGAT TCGGATTCGA
  GGCTGATGTT TCTGGGGAAG CCTCAGGTGG GCGCAGCCAT CCCCAGCCCT TCTGACCCAG
  TGTCTTCTCC TACAGGGGCT GTTGTGGCCA GTGAACTGCG CTGTCAATGC CTGAAGACCC
  TGCCAAGGGT TGACTTCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ
ss61198268	NES16702724	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ
rs48508524					SNP	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198268	NES16702724	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91051839 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Gm73232	predicted gene, 73232	776 bp upstream
Rr614420	regulatory region 614420	787 bp distal
Rr614421	regulatory region 614421	918 bp distal
Rr614422	regulatory region 614422	97 bp distal
Tssr47224	transcription start site region 47224	271 bp downstream
Tssr47225	transcription start site region 47225	169 bp downstream
Tssr47226	transcription start site region 47226	100 bp downstream
Tssr47227	transcription start site region 47227	89 bp upstream
Tssr47228	transcription start site region 47228	132 bp upstream
Tssr47229	transcription start site region 47229	159 bp upstream
Tssr47230	transcription start site region 47230	184 bp upstream
Tssr47231	transcription start site region 47231	204 bp upstream
Tssr47232	transcription start site region 47232	369 bp upstream
Tssr47233	transcription start site region 47233	386 bp upstream
Tssr47234	transcription start site region 47234	458 bp upstream
Tssr47235	transcription start site region 47235	1208 bp upstream
Tssr47236	transcription start site region 47236	1228 bp upstream
Tssr47237	transcription start site region 47237	1277 bp upstream
Tssr47238	transcription start site region 47238	1283 bp upstream
Tssr47239	transcription start site region 47239	1343 bp upstream
Tssr47240	transcription start site region 47240	1355 bp upstream
Tssr47241	transcription start site region 47241	1370 bp upstream
Tssr47242	transcription start site region 47242	1407 bp upstream
Tssr47243	transcription start site region 47243	1430 bp upstream
Tssr47244	transcription start site region 47244	1464 bp upstream
Tssr47245	transcription start site region 47245	1484 bp upstream
Tssr47246	transcription start site region 47246	1535 bp upstream
Tssr47247	transcription start site region 47247	1579 bp upstream
Tssr47248	transcription start site region 47248	1642 bp upstream
Tssr47249	transcription start site region 47249	1712 bp upstream
Tssr47250	transcription start site region 47250	1850 bp upstream
Tssr47251	transcription start site region 47251	1914 bp upstream
Tssr47252	transcription start site region 47252	1966 bp upstream
Tssr51810	transcription start site region 51810	837 bp upstream
Tssr51811	transcription start site region 51811	783 bp upstream
Tssr51812	transcription start site region 51812	221 bp downstream
Tssr51813	transcription start site region 51813	253 bp downstream
Tssr51814	transcription start site region 51814	1227 bp downstream
Tssr51815	transcription start site region 51815	1261 bp downstream
Tssr51816	transcription start site region 51816	1295 bp downstream