rs48508589 SNP Detail

Summary

• ID
  rs48508589
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26808652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCATA GCTCATTGCT ATTTGCTAGA
  S
  TTGCTTTCAT TCTCCTTTTT ATCCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61582188	NES17531458	PERLEGEN	MM_PANEL2	f	SNP	G			G	G	G		G		G	G	C		G
ss137448339	ENSMUSSNP1193758	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G				G
ss323954165	CHEV_12_27443518	CHEVERUD	SCREENING_POP	f	SNP									G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48508589					SNP	G	G	G	G	G	G	G	G	G	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61582188	NES17531458	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26808652 () rs orientation: forward

Symbol	Name	Function Class
Rr259939	regulatory region 259939	1452 bp distal
Rr266884	regulatory region 266884	within coordinates