rs48509033 SNP Detail

Summary

• ID
  rs48509033
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:35958375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTCTAGA CAAGACAGTT
  TTTTAAACTT GACTATTCTA CAAACTGATG ATGATAGTGT GTGAGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTCTCC ATGTGTCCAT ATCCATTCCT GTATAGTCTA
  CCCCATGGCT GGTGATAAAT GCCCAAAGCT ATTTGAGAAA ATGTCCTTCA ATGGTAGATA
  R
  TCTGTCTGAG GAGTAGTTAA ACGTGTGTAA GCGCATGCCT TAAATGAAAA CACATTGGCC
  CACTTAACAC AGGTGTCTGT CCCATGTCTA TGTGTCTATC TGTGTGTCCA AGGTTATATT
  TGTTTCAAAT ATGGAAAAAT ATAGAACCAG TAGTTAACAA TGAATTTTGC TACATAAAGA
  TTTGAGTCAA AATTCAAATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61762172	NES17696575	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48509033					SNP	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61762172	NES17696575	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:35958375 () rs orientation: forward

Symbol	Name	Function Class
Cdyl	chromodomain protein, Y chromosome-like	within coordinates
Gm48708	predicted gene, 48708	within coordinates
Rr477257	regulatory region 477257	1792 bp distal
Rr477258	regulatory region 477258	656 bp distal
Rr477259	regulatory region 477259	329 bp distal
Rr477260	regulatory region 477260	507 bp distal
Rr477261	regulatory region 477261	408 bp distal
Rr477262	regulatory region 477262	1722 bp proximal