rs48509090 SNP Detail

Summary

• ID
  rs48509090
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:100658625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTGTGCA TGACACATGA
  ACACCAAACA GGGCTTAGAC TATCTCATGC CTCATAAAAA TTGCCCTTTG CCTCCATCAA
  AACTCTTACA AAAATCAAGA TATCAGAGAC ACTGCTTGGG TTTCTGCTAA CTCAACAACT
  GTGGCAAAGT AGAAAGGAAA TGCATTAGGC CAATGACCAA AAAAAAAAAA TGTACATAAA
  S
  AAAGATAACA GTGATGCACT CTACTGTTGA TAGACAGACA GTATAAAGTC TAACGGTTCC
  AGGAGTTGTG GCTGAGATAA TTAATGGGCA AGCTTCGGAA AACAATTGGG CATTGTTTTA
  TAAAGAGGTA TATTCACCAA CTCTTCACCC CAGGAGCTCC ACACTTGAGT ACGGGTTGAA
  GAGAAATTTG CTCTAGTGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
ss61948279	NES17113779	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
rs48509090					SNP	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61948279	NES17113779	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100658625 () rs orientation: forward

Symbol	Name	Function Class
Gm57598	predicted gene, 57598	222 bp upstream
Ocln	occludin	within coordinates
Rr484926	regulatory region 484926	within coordinates