rs48509183 SNP Detail

Summary

• ID
  rs48509183
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:12421666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGATGTCT TAGCCGTTCG
  TTCCCCTCAG TTCCAGATGA TGTAAGAAAT GCCTGCAGTA AACTTGGGTA AATCTAAGAG
  AAAGGAGGAG GCACTCATTT CTGCATGCAG TGTTCCACCT CTAGTCACAG CACATGGGAC
  CACTGCAACC CTTAGAACCA TGGCTGACCT ATTGTCCTCC CTCAACAGAC GAAGAAATCA
  K
  CAGTCTCAAG ACACCGAAGC TGCTATTTTT CTGAGTTGCC AATTCATCAT CTTTGAGAAT
  ATGTGTGTCT TATGAGCCTC CTAAATCCTA GGTTTTCTCC AAAGGAGACT GCAAGCAAGC
  TAGGCTGGCT TTTAATATTC ATTAAGAAGT CTTTAACTTC TGAACTTCGG AAACTTTTCA
  GTTTCAATCT AGCTGCCAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61349676	NES16962113	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48509183					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61349676	NES16962113	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:12421666 () rs orientation: forward

Symbol	Name	Function Class
4921511I17Rik	RIKEN cDNA 4921511I17 gene	within coordinates
Cyria	CYFIP related Rac1 interactor A	within coordinates
Rr259609	regulatory region 259609	466 bp distal
Rr259610	regulatory region 259610	within coordinates
Rr386868	regulatory region 386868	183 bp upstream