rs48509596 SNP Detail

Summary

• ID
  rs48509596
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46044586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCCACTGGG GTTAGAGCCA GCTCACCTGG GGCGCAGGCA
  GGGTTCCTTG CTGGTGGGTG CTCTGCCAAC CGCCCCCCTT TCCGGGACTC CCAGTGGGTA
  R
  ACTGGGGAGG GGGGCACTGG CCGAAAGACA GGCCCCCTTC TGTCCCACTC TGTAGATGGG
  TCGAACTGGG CACAGTATGC CTGATGGATA GAGAGGACA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss145695599	ENSMUSSNP516882	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss325403981	CHEV_17_45870609	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs48509596					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46044586 () rs orientation: forward

Symbol	Name	Function Class
1600014C23Rik	RIKEN cDNA 1600014C23 gene	within coordinates
BE949265	cDNA sequence BE949265	1442 bp downstream
Cpgi9207	CpG island 9207	within coordinates
F630040K05Rik	RIKEN cDNA F630040K05 gene	846 bp upstream
Rr331489	regulatory region 331489	1786 bp distal
Rr339882	regulatory region 339882	within coordinates
Tssr144810	transcription start site region 144810	925 bp upstream
Tssr148277	transcription start site region 148277	183 bp downstream