rs48510545 SNP Detail

Summary

• ID
  rs48510545
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98852778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TTCTGACTGT GGGAACTGTA GCTGCTCTCC CCAAGGCTGC
  TCAGCCAGAG ACTGTGGTCC TTGCTCAATT GCCCCTTGGG ACAAAAATGC CTTGCTTTCA
  Y
  TCCTAGGAAA TAGATTACAG TGGCACTCTC TTGCTATGTA GAAAGGCTCC GTTGTCAGCA
  AGGAAGATCT CTATATAGTG AGTCTCCGAG CTGCGGACCA C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63622721	NES17045863	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T		C	C	T	C
ss148461901	ENSMUSSNP1241797	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48510545					SNP	C	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63622721	NES17045863	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98852778 () rs orientation: forward

Symbol	Name	Function Class
B430209F14Rik	RIKEN cDNA B430209F14 gene	484 bp upstream
Cpgi7685	CpG island 7685	1181 bp distal
Gm49450	predicted gene, 49450	1346 bp upstream
Gm56698	predicted gene, 56698	within coordinates
Rr370012	regulatory region 370012	1570 bp downstream
Rr404613	regulatory region 404613	1126 bp downstream
Rr509236	regulatory region 509236	1630 bp distal
Rr509237	regulatory region 509237	1357 bp distal
Rr509238	regulatory region 509238	1237 bp distal
Rr509239	regulatory region 509239	704 bp distal
Rr509240	regulatory region 509240	297 bp proximal
Tssr132970	transcription start site region 132970	1823 bp downstream
Tssr132971	transcription start site region 132971	1128 bp downstream
Tssr136334	transcription start site region 136334	1378 bp upstream
Tssr136335	transcription start site region 136335	1364 bp upstream
Tssr136336	transcription start site region 136336	1337 bp upstream
Tssr136337	transcription start site region 136337	1306 bp upstream
Tssr136338	transcription start site region 136338	1290 bp upstream
Tssr136339	transcription start site region 136339	1238 bp upstream
Tssr136340	transcription start site region 136340	1221 bp upstream
Tssr136341	transcription start site region 136341	1198 bp upstream
Tssr136342	transcription start site region 136342	562 bp downstream
Tuba1a	tubulin, alpha 1A	1396 bp upstream