rs48511082 SNP Detail

Summary

• ID
  rs48511082
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:14553178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTACATGGG CCTTGAATTC
  CTGACCCTCC CCTCCCATTA CTGCCTTCGC CTCAGAAGTG AATACTGACA AAGGCAAGGC
  TTGGCATACA CCCTGCATTC AGAAACGGCC ACTTCCTTCC TTCTCCACCA AGATTGGCTT
  CTCCCTGGCC CTGTGACACC ACAAGGGAAA TCTTTCTGTT TTGATGACCG CAGTGAGACC
  K
  TAACCACTGA CCTTCTGTGA TTTGCCTGCC TCATGCTGAC AGGCTGGGCT TCCCAATCTT
  CCTGCCTCTC CCCTAAGGAG GAATGCAAGC AGGGGGTGGG GGAAGTCCCC AACCTCTACC
  TCAAACTGCT GAGTGAGCAA AGCTAGAAGA AGAAATGCTT TGTGGGTACC CTGAAAGGCC
  AGTTCACCCT GTACCAAATC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60690281	NES16226456	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48511082					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60690281	NES16226456	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:14553178 () rs orientation: forward

Symbol	Name	Function Class
Amotl1	angiomotin-like 1	within coordinates
Gm34263	predicted gene, 34263	1767 bp upstream
Tssr2784	transcription start site region 2784	1727 bp upstream
Tssr83841	transcription start site region 83841	1765 bp upstream
Tssr88175	transcription start site region 88175	1641 bp downstream
Tssr88176	transcription start site region 88176	1673 bp downstream