rs48511156 SNP Detail

Summary

• ID
  rs48511156
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110952632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATAGATGG GTGTTTGCTG
  GGAATCAAAC CTGAGTCCTC TGGAACAGCA CACAGGCAGG AAGTGCTCTT AATGGCCAAG
  TCCTCTCTCC AGCCCCCACA CCGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  CCCTGTTCCA CTGAGTTTTA CTGTGTTGTT TCCAGGAACA TGGGAAACAG TGGCTTCTCT
  S
  CCTTCCCTAG CAAGAGCTGA GTGCACATAA ACCCTCTGGG GAGGGGAGTG CTACAGGCCA
  CTCTCTTCAC TATGAGACAT GGACTTACAT GTCCTAGGCC AGCCTCTTAC CGTGTATTGA
  GTAGGATAAC CTGGAACTTA GAGGTCATCC TGCTGCCTTC ACTTCCCCAG TGCTGGCATG
  ACGGCAGACA TGCCTGTGTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61718111	NES17662535	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48511156					SNP	C	C	C	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61718111	NES17662535	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110952632 () rs orientation: forward

Symbol	Name	Function Class
Gm48630	predicted gene, 48630	within coordinates
Gm51959	predicted gene, 51959	within coordinates
Gm60603	predicted gene, 60603	within coordinates
Rr254698	regulatory region 254698	832 bp distal
Rr259298	regulatory region 259298	1032 bp distal
Rr259299	regulatory region 259299	1769 bp proximal
Rr266321	regulatory region 266321	1170 bp proximal
Tssr3954	transcription start site region 3954	781 bp downstream
Tssr117807	transcription start site region 117807	906 bp downstream
Tssr117808	transcription start site region 117808	932 bp downstream