rs48511333 SNP Detail

Summary

• ID
  rs48511333
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60060022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGGGGGT TGGTATCTAG
  TGACCCATAG CAAATCAACT GATACTTGTG TCAAGAACAT CATTTGATTA GTTTCATTAG
  CCCCCTAAAA TTAGTCACAT TTCCAAAAGA CCCCTCGAAA ATCATGAAGG TTTTTTCCCT
  TTCACTGGAA AAGGAGTTAG AAATGGTGCT GGTTATTTCA AGTGCTGCAA TGAGTCACAC
  R
  GGAAATATTG TCAAATCCAA AGACGTTCAC AGGCAGTATG TTAGATTTGT ATGAGTAAAC
  ATTGGTAATG TGAATGTTTT AAACATTGTA CTCTGCATGA GAAAGATGAA GATGATGGTA
  AGCGTTTCTA CTGCCCGTGA TAGAGCTTTC TGCATCAGAC TCCTGCAACT TTGTTTACTG
  TAAGACAACA GTGTTAGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52559988	NES15632463	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48511333					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52559988	NES15632463	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60060022 () rs orientation: forward

Symbol	Name	Function Class
Gm2682	predicted gene 2682	641 bp upstream
Gm41331	predicted gene, 41331	425 bp downstream
Rr390810	regulatory region 390810	within coordinates
Rr502965	regulatory region 502965	563 bp distal
Tssr4605	transcription start site region 4605	964 bp upstream
Tssr134460	transcription start site region 134460	1276 bp upstream
Tssr134461	transcription start site region 134461	1142 bp upstream
Tssr134462	transcription start site region 134462	1040 bp upstream
Tssr134463	transcription start site region 134463	990 bp upstream
Tssr134464	transcription start site region 134464	890 bp upstream
Tssr134465	transcription start site region 134465	842 bp upstream
Tssr134466	transcription start site region 134466	833 bp upstream
Tssr134467	transcription start site region 134467	790 bp upstream
Tssr134468	transcription start site region 134468	758 bp upstream
Tssr134469	transcription start site region 134469	710 bp upstream