rs48512369 SNP Detail

Summary

• ID
  rs48512369
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:54867485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACTAGCC ATCACACATT
  GAGTAATAAT TCTGGCATCA CAAGTACATG GTTGTGGGTA GACAAGCCCC GAATCTTACT
  AGAATTGACT ATACATCCTT AAATGATCCT GTTTCAGTCT TGTTACACTC AATAGTAACA
  TGAGTAGAGA AGTGAATCCA TATATTACCT TGCCATATCT CCAGCTTATG CCCAGAGGCT
  W
  GCCAGTTACC CCTGTAGGGA TCAGGACTGG TCTGGATGGT TATACCAAGA TCTCTCACTT
  GGACATCAGT GGCCCTGGAC TGATTTTCTT TCTCCATAGG CACCTGCCTC TGTAAAGTCC
  AGTTCTTCAC ACTAGCCTAG GGCAGCACCC TATACTCCGG CTTTCAGCTG CCTTTTCTAC
  CTGTGCCCCC TCTTCACCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61403643	NES16782417	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A		A	A	A		A
ss322966290	CHEV_9_54808008	CHEVERUD	SCREENING_POP	f	SNP											A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48512369					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61403643	NES16782417	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:54867485 () rs orientation: forward

Symbol	Name	Function Class
Rr204186	regulatory region 204186	310 bp proximal
Rr209620	regulatory region 209620	716 bp proximal