rs48512524 SNP Detail

Summary

• ID
  rs48512524
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:91177044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGCCACA TGGGGTGGTC
  AAAGGATAAC TTTCTTCCAC TTTTTTGTTT GTTTGTGTTT ACAGGATCTC ATTGAGTAAC
  CTTGGCTTGT TTGGAACTCT ATGTTATCTA GGCTGGCCTC CAACTCCTAT GTGCAACCCA
  GCTCTGCGGG GGATCTCTTC CCCTCAATGG AAGTCAGGGT ACTTGGTCCT AATCTGAGGA
  Y
  TCCTCTGCCT CACATCTTCC CGAGTTTGGA AACAGGTCCT CATGCTGACA AACGCTTTAC
  TCCCTGAACC CAAGTGCCTC ATTTCAAAAG AAATCTTAGG GTCTAGGGTG TGGGGGGAGG
  GGGGAGACGG GGGGGGGGGG GAGGCGGGGG GAGGGGGCGG GTAGCTCAAA GGTAGTGCTT
  TGCATGTGAG ACCTCCTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60767814	NES16403369	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs48512524					SNP	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60767814	NES16403369	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91177044 () rs orientation: forward

Symbol	Name	Function Class
Cpgi571	CpG island 571	574 bp proximal
Rr366958	regulatory region 366958	623 bp upstream
Rr415585	regulatory region 415585	1381 bp distal
Rr415586	regulatory region 415586	within coordinates
Rr415587	regulatory region 415587	499 bp proximal
Rr415588	regulatory region 415588	1255 bp proximal
Tssr8065	transcription start site region 8065	871 bp upstream
Tssr8066	transcription start site region 8066	975 bp upstream
Tssr8067	transcription start site region 8067	989 bp upstream
Tssr8068	transcription start site region 8068	1160 bp upstream
Tssr8069	transcription start site region 8069	1253 bp upstream
Tssr12938	transcription start site region 12938	718 bp downstream
Ube2f	ubiquitin-conjugating enzyme E2F (putative)	368 bp upstream