rs48513450 SNP Detail

Summary

• ID
  rs48513450
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:162954393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCATGAGAT CTGAAAACCA CAGATATGCA
  AAGCCTCGGG AAACTCGACT GAAAAGATAT GGTTGCTATG AACAGCTCAG TCAGTCAGCA
  TAAAGCTTAA GGAACGTCAA GGCAGAGGTG GGGATGAGAG CCATCGTTCC CTACATGATG
  W
  GGTGGTTTCA GGTTTTTAAA TATGTGACCA TGAGTTTGGC GTGTCAGAGG CAAGCCTTTC
  TAAATGACAC TTGGAGCAGT CATGGACGAT AACAGGAAGC AGATGTgaat actgacttta
  agtcagacct gggttcataa tcacatccgg                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss145951623	ENSMUSSNP5688913	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320084461	CHEV_1_165056955	CHEVERUD	SCREENING_POP	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs48513450					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162954393 () rs orientation: forward

Symbol	Name	Function Class
D1Mit314	DNA segment, Chr 1, Massachusetts Institute of Technology 314	788 bp distal
Rr407202	regulatory region 407202	within coordinates
Rr422057	regulatory region 422057	within coordinates