rs48513780 SNP Detail

Summary

• ID
  rs48513780
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30259990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTGGGGGGT GGGGCACACC TGTAGCAGTC AGATCACTTA
  CAGGATTTGA GGATCAAACG CAGGTCATGA CTGGCAGCAA GTGTCCCTAC CATTGAGTTA
  Y
  CTCACTAGAC TCTTTGCTGA AATTATGTTG ACACAGGGTA TCACTACAAA CCCCAGCTGG
  CCTGGAAGTC ACAGAAATCC ACCATGCCTC TGCTTCCCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60990762	NES16136501	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	T	C		T	T		C	T	C	T		T
ss148682520	ENSMUSSNP605361	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
ss322135275	CHEV_7_31345584	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48513780					SNP	T	T	T	T	T	C	T	C	C	T	T	T	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60990762	NES16136501	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30259990 () rs orientation: forward

Symbol	Name	Function Class
Lin37	lin-37 DREAM MuvB core complex component	727 bp upstream
Psenen	presenilin enhancer gamma secretase subunit	1300 bp downstream
Rr400243	regulatory region 400243	669 bp downstream
Tssr71791	transcription start site region 71791	1818 bp upstream
Tssr71792	transcription start site region 71792	1780 bp upstream
Tssr71793	transcription start site region 71793	1034 bp upstream
Tssr71794	transcription start site region 71794	913 bp upstream
Tssr71795	transcription start site region 71795	723 bp upstream