rs48514578 SNP Detail

Summary

• ID
  rs48514578
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:95900044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCGGAGC CCTTCTTCCA
  GTTCAGTGGT TGGTGGCAAT TCTTCAACTA AGCAGACTTC CATCCATCTG GAAAGATCAT
  AAGACATTAA ACTTTGATGG ATTCCAGGTA GGTGACAGTC CATAAAGGGA GAGGCACAGT
  GCTCTGCTGT GTGCTGGAGA CACTGTGGAA GAAAACAGGC CTCAAAGATC TTTCTGAGTT
  Y
  AGGATTTCTG GGCAGAACAA GGATTCAGGA CAGAAGGTGA ATGAGAGGGT TTGGTTTAGA
  GGCACAGAAC TCACTGGGTG CCAGAGCTTG TTAAAGTCAC CTTTGTCGAA ACCTTTGCCA
  ATTCCCATCA GAGCCAGAGA CAGGGAAAAG GCCAAATCCT TTTGTAAGGG TAGAATTAGT
  CCTGCTGACA TTAAAGAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144993636	ENSMUSSNP1157234	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48514578					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:95900044 () rs orientation: forward

Symbol	Name	Function Class
Gm32702	predicted gene, 32702	1552 bp upstream
Iqgap2	IQ motif containing GTPase activating protein 2	within coordinates
Rr484141	regulatory region 484141	261 bp proximal
Rr484142	regulatory region 484142	1150 bp proximal
Rr484143	regulatory region 484143	1566 bp proximal
Tssr120725	transcription start site region 120725	1585 bp upstream
Tssr120726	transcription start site region 120726	1789 bp upstream