rs48514976 SNP Detail

Summary

• ID
  rs48514976
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:74859692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGCT TCTGAAGCTT GGGTTCTTAA
  R
  TCCTAGAGAT GCAGAAAATC TAGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136638895	ENSMUSSNP3569856	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss323007475	CHEV_9_74800217	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48514976					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:74859692 () rs orientation: forward

Symbol	Name	Function Class
Atosa	atos homolog A	470 bp upstream
Cpgi22037	CpG island 22037	74 bp proximal
D9Mit1008	DNA segment, Chr 9, Massachusetts Institute of Technology 1008	1438 bp distal
Gm68252	predicted gene, 68252	within coordinates
Rr401515	regulatory region 401515	273 bp downstream
Rr401516	regulatory region 401516	319 bp upstream
Rr683033	regulatory region 683033	588 bp distal
Rr683034	regulatory region 683034	674 bp distal
Rr683035	regulatory region 683035	within coordinates
Rr683036	regulatory region 683036	397 bp proximal
Rr683037	regulatory region 683037	688 bp proximal
Tssr86114	transcription start site region 86114	442 bp upstream
Tssr86115	transcription start site region 86115	664 bp upstream
Tssr86116	transcription start site region 86116	746 bp upstream
Tssr86117	transcription start site region 86117	1151 bp upstream