rs48515067 SNP Detail

Summary

• ID
  rs48515067
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72534003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GCCTGGTCTA CAAAGTGAGT GCCAGGACAG CCAGGGCTAC
  ACAGAGAAAC CCTGTCTCGA AAAAACAAAA CAAAACAAAC AAACAAACAA AAAAATATGT
  R
  TTGTTTGAGT CTGGGGAGGG GGAGGGGAAA AACATGTGAC TGCAGATACC AGCAGAGCCT
  GGAAGAGGGG CACCAGAGTT GGAGTTATAA GCAGTTGTGA A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133285583	ENSMUSSNP1020012	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48515067					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72534003 () rs orientation: forward

Symbol	Name	Function Class
Capg	capping actin protein, gelsolin like	within coordinates
Tssr57142	transcription start site region 57142	1217 bp downstream
Tssr57143	transcription start site region 57143	1191 bp downstream
Tssr57144	transcription start site region 57144	902 bp downstream
Tssr57145	transcription start site region 57145	862 bp downstream
Tssr57146	transcription start site region 57146	843 bp downstream
Tssr57147	transcription start site region 57147	314 bp upstream
Tssr57148	transcription start site region 57148	1653 bp upstream
Tssr57149	transcription start site region 57149	1746 bp upstream
Tssr61469	transcription start site region 61469	769 bp downstream