rs48515347 SNP Detail

Summary

• ID
  rs48515347
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:77725886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAATTCTG TCATGAAAAG
  GAGTCTAAGG CCATTCGAGA TGTAACAAAA GAATCAGGTC CTAGATTTCT ACTTGAGCAC
  TGATTGATCC CTGGATTCAA TTCACATGGA GTAGGTTGTG AGTTGACCTT AAGAAAGAAA
  TCAGTGTTTG AAGTTGGGCC TTGTGATTCA CTTACACATT AGATTTCATT TCAAGGTATA
  Y
  ATTGTGCCTT TGACCTGGAA GGTACTGGAA AAAGACCTGG AAGGTCTGCA AAATTCTCTT
  TATGTGAGTT AGGAAGGACT AAAGGACCTG AATGGGTTTT CAACCCCATA GGAAAAACAA
  CAATATCAAC TAGCCAGAAC CCTCAGAGCT CTCAGGGACT AAACCACCAA CCAAAGAGCA
  GACATGGAAG GACCATGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61022926	NES16107680	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48515347					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61022926	NES16107680	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:77725886 () rs orientation: forward

Symbol	Name	Function Class
Gm53379	predicted gene, 53379	within coordinates
Tssr67298	transcription start site region 67298	1479 bp upstream