rs48515940 SNP Detail

Summary

• ID
  rs48515940
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140428184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGACGGGGA GCTCTCTTTG CTTGTAACTA CTCGAGACTC
  CCATGTCTCC ACGGGGCAAG GCTTGGGTCT GCAGGATGCA ATATCAGCAG TACCAGGGAT
  R
  GGAACATGAG GGCCAGGAAT GAGATGCAAC AGGGAGGGCA TCCCAGCACC TGGTCACCCT
  CTTGTCCATG GACAGAGCCA GCCATGGCAG AGGAGGTATG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61072222	NES16047760	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48515940					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61072222	NES16047760	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140428184 () rs orientation: forward

Symbol	Name	Function Class
Cimap1a	ciliary microtubule associated protein 1A	within coordinates
Gm45785	predicted gene 45785	within coordinates
Rr657759	regulatory region 657759	189 bp distal
Rr657760	regulatory region 657760	1108 bp proximal
Scgb1c1	secretoglobin, family 1C, member 1	1502 bp downstream
Tssr69848	transcription start site region 69848	511 bp downstream
Tssr69849	transcription start site region 69849	492 bp downstream
Tssr69850	transcription start site region 69850	478 bp downstream
Tssr69851	transcription start site region 69851	458 bp downstream
Tssr69852	transcription start site region 69852	442 bp downstream
Tssr69853	transcription start site region 69853	423 bp downstream