rs48516472 SNP Detail

Summary

• ID
  rs48516472
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:113621926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTTGGTA ATCCTGTGAT
  GTCTCTGCAG CCTGGATAGA GGGTGCTTAG CTCCCCTGCA GCTGCGCACT GGCAAGTTCT
  GTCTTCACCA GAAGCAAGCT TTGTTCCGTG TGGCCCTACT GTCTGTGCAC AGAGCTGCCT
  TTGATGGGCT GGCTTTGACG TGATTTGTTT ACGGCAGCCA GAACGCTTCC TGCATAATGA
  R
  AGCAGTTAAT CATGGAAACT GGGCTATTCC TGTTTGTGCA CTTGTAGCGT GCTTCTGTTG
  TAAATATTAA AAGGTAATGA CCAAAGGATG AAAACCTTTT TTAAAAGGTG CAAACCAGCT
  AATCCATCAG ATCATGTGAT TGCTACTGAT TACATGGATA TCTTTAGGGA AGCAGAAAAT
  GATTGCTGAA CACATGCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61225179	NES16842650	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48516472					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61225179	NES16842650	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:113621926 () rs orientation: forward

Symbol	Name	Function Class
Clasp2	CLIP associating protein 2	within coordinates
Rr205836	regulatory region 205836	within coordinates
Tssr3045	transcription start site region 3045	436 bp upstream
Tssr87530	transcription start site region 87530	106 bp downstream
Tssr87531	transcription start site region 87531	16 bp downstream
Tssr87532	transcription start site region 87532	123 bp upstream
Tssr87533	transcription start site region 87533	170 bp upstream
Tssr87534	transcription start site region 87534	458 bp upstream
Tssr87535	transcription start site region 87535	489 bp upstream