rs48516730 SNP Detail

Summary

• ID
  rs48516730
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:45861606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGACACA CAAGAGACTG
  GCAGTGTTCT GCCTGCGTGC ATTCCTGGTG TATCCATAAG TAAACAAGTA CTCGGCACCT
  ACTGTATGTC ATGTATAGAA ATAAAATGCA ATTTCCTACC TTCAAAAGGC ACAGCCTAGT
  TGAGGAGAAG ACATGCAAAC CAGTCATTAT AATAGATTGT GATAAAGACC GGGCAATGGT
  Y
  GTTCTGGGTG TGAATAGTCA CTGTGCCAAC CCACTGTGTT ACTGGGGTCT TTGTCAGACA
  GTAACTGTTC TTCCTTACCC GGAGGAGACC AAGGCATGAG GAGGACAAGT GAGTGCTTAC
  GGAACCACCT GCCAGCACCC ACAGGATGAC TCCTAGACTT CAGAGCTTTC TCTTTGTGAA
  GGGAAGTGAC ACACATCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60259859	NES15755839	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48516730					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60259859	NES15755839	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45861606 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9192	CpG island 9192	695 bp distal
Rr405301	regulatory region 405301	1450 bp upstream
Tmem151b	transmembrane protein 151B	1003 bp upstream
Tssr148206	transcription start site region 148206	1097 bp upstream
Tssr148207	transcription start site region 148207	1012 bp upstream
Tssr148208	transcription start site region 148208	961 bp upstream