rs48516964 SNP Detail

Summary

• ID
  rs48516964
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:130133936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCCCCAGA CAAAGTAGAA
  AGCAACCTCC TGGGAGACAG GAGGAACCTG AATCCAGAGC CTTGTGCTGA AAGAGTACCT
  GAAATAGGAG GGAAAGTCTT AAAGCAGAAA GCTCGGGAGA AGGAACCCAG AAACCATCAA
  GGGCCGACTA GAAAGCCCAA CGTGGATGAG CGGGGCAGAG GAACTGGCAG CAGGATGGAC
  Y
  GACACTTGGT GCTGCTAGGG GCATAGCCCA GCCTGACTTG CCAGACGATG TAATAGCTCC
  TTGGGTGTAA AGCATAGGCC AAGCCACACC AAAAATATTT AACCATTTTT TAACCCACGA
  AAGGGAAAAA AATTTCATCT CGGGACAACC TATCTGTTGG CTTGGCCAGC TAACTTTACA
  ACTAAAGAGA CATAAAAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61062481	NES16062238	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48516964					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61062481	NES16062238	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:130133936 () rs orientation: forward

Symbol	Name	Function Class
Gm57247	predicted gene, 57247	763 bp downstream
Nsmce4a	NSE4 homolog A, SMC5-SMC6 complex component	320 bp downstream
Rr153982	regulatory region 153982	1936 bp distal
Rr153983	regulatory region 153983	1336 bp distal
Rr153984	regulatory region 153984	736 bp distal
Rr153985	regulatory region 153985	1065 bp proximal
Rr169359	regulatory region 169359	136 bp distal
Rr169360	regulatory region 169360	999 bp proximal
Rr381489	regulatory region 381489	1 bp downstream
Tssr69470	transcription start site region 69470	893 bp downstream