rs48517996 SNP Detail

Summary

• ID
  rs48517996
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106701614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTA TGTGTTCAAG GCTAGCCTGT
  A
  CTATAGAGGC TAGCTAGGGG TACAT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136940641	ENSMUSSNP4136762	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss323187395	CHEV_9_106726746	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48517996					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106701614 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22276	CpG island 22276	1699 bp distal
Dcaf1	DDB1 and CUL4 associated factor 1	within coordinates
Rr401655	regulatory region 401655	1668 bp downstream
Rr686403	regulatory region 686403	1159 bp distal