rs48518072 SNP Detail

Summary

• ID
  rs48518072
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:107461269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTATGCTG ACATTGCCCA
  ATATGGTGGT GATGTAGACA CCCAGGAACA ACACAAAGAA GATACAACAA AGGGTGGGGA
  CCTCAGTTAG CCCCAAAATA ATGAACTCTG TTACCATTGT GTGGTTCCCA GGCTCTATCT
  TTTTTGAAGT GCTTCCTACT GAAATAAAAC CAGTGGCTAT CAGAATACAT TAAATGGCCT
  Y
  ATGATTGATA TACACTACTC CACATTTAGC CCATTAAAAA TAAATGTGGA TTTCATTTTG
  TTCTGATGTT TGTTTTCCCC CAAATCTTTC CCAAACCAAG TTACATCATG AATAATTTCA
  GAATATTAAT CATCATTTAC CTTAAGCCCA CAGATACAAA CTGAGCAGTG ACTCAGATCA
  GAACACAGGA CTCACTCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61045682	NES16080022	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C		C	T	C	C		C
ss322381994	CHEV_7_115005576	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48518072					SNP	C	C	C	C	C	C	T	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61045682	NES16080022	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:107461269 () rs orientation: forward

Symbol	Name	Function Class
Gm10156	predicted gene 10156	977 bp upstream
Or5p5c-ps1	olfactory receptor family 5 subfamily P member 5C, pseudogene 1	63 bp upstream
Rr652939	regulatory region 652939	829 bp proximal
Tssr68454	transcription start site region 68454	898 bp upstream