rs48518256 SNP Detail

Summary

• ID
  rs48518256
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106104417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAAACTTAG GTTTAAAAAA GTTTTTATTT TTTCATTTCC
  TTTTTCTGAA CAGTAACTCT TAATGTGGTA TCTAAGGCAA AGCGTGTAAA GGGAATCTAT
  G
  AATTCCCCAA ACACATCAGG CTTATTTTGT TCTGTTATAG AGCCAAATGT ATGTTTCTCC
  AGGTTAGCTC TGTTTCGATT GAATTTAGGG CAGGTGGCT                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145614776	ENSMUSSNP3997159	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48518256					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106104417 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr68401	transcription start site region 68401	1572 bp downstream
Tssr74117	transcription start site region 74117	1684 bp upstream
Tssr74118	transcription start site region 74118	1637 bp upstream
Tssr74119	transcription start site region 74119	1239 bp upstream
Tssr74120	transcription start site region 74120	1222 bp upstream
Tssr74121	transcription start site region 74121	1159 bp upstream
Tssr74122	transcription start site region 74122	1142 bp upstream
Tssr74123	transcription start site region 74123	1109 bp upstream
Tssr74124	transcription start site region 74124	1064 bp upstream
Tssr74125	transcription start site region 74125	1053 bp upstream
Tssr74126	transcription start site region 74126	1017 bp upstream
Tssr74127	transcription start site region 74127	866 bp upstream
Tssr74128	transcription start site region 74128	786 bp upstream
Tssr74129	transcription start site region 74129	255 bp upstream
Tssr74130	transcription start site region 74130	206 bp upstream
Tssr74131	transcription start site region 74131	within coordinates
Tssr74132	transcription start site region 74132	131 bp downstream
Tssr74133	transcription start site region 74133	830 bp downstream
Tssr74134	transcription start site region 74134	1057 bp downstream
Tssr74135	transcription start site region 74135	1140 bp downstream
Tssr74136	transcription start site region 74136	1208 bp downstream
Tssr74137	transcription start site region 74137	1274 bp downstream
Tssr74138	transcription start site region 74138	1304 bp downstream
Tssr74139	transcription start site region 74139	1338 bp downstream
Tssr74140	transcription start site region 74140	1393 bp downstream
Tssr74141	transcription start site region 74141	1793 bp downstream
Tssr74142	transcription start site region 74142	1936 bp downstream