rs48519354 SNP Detail

Summary

• ID
  rs48519354
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127274174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGTCTGG TTTTTGTTGT
  CTCCTGGCAT ACTTTCTCAT AGCAATAGCC ATAAAGGACA TGTTTCTGCT TCAGGTAACC
  ACATTCAGGG CAAATGTTGG GAGCTATTAA GACAACTCTT GATCTTTAAA TTGGACCTCT
  CTCCACGAGA AGAAAAGAGG GTCAAAAGCG GGCCACCGAC ACATGGATTC TGAGAACCAC
  R
  GGATGTTCCA GCCCTAAATC ATCTCAGATG TCCTGACCAC ACCCTGATAC CACCAAGTTC
  CTGCTTCCCC GTGTAACTGC CTAAGAATGT GCAATTCTAT TGCCCTCCTC CCACTGATAA
  GTACTTCTCC TTTTGCTTGT ATTGCCCCAC CCCTCCCGCT GATAAGTATC TGTACTTCCC
  CTTTTGCTTG TGCATTTAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135864447	ENSMUSSNP3885824	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48519354					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127274174 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Gm42525	predicted gene 42525	within coordinates
Gm43355	predicted gene 43355	within coordinates
Gm54939	predicted gene, 54939	595 bp upstream