rs48521513 SNP Detail

Summary

• ID
  rs48521513
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:187996013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTTTCAAT CTGTTGAAAA TGAAAATGGA CAGCGAAAAT
  ATTGAAATAG TTGCATTGAG GGGGGCATAT ATCTGAACAT ACCTCAAGTA CATATGTAAC
  W
  TATATTATTT AGTATAACAC ACAATAGAAT TATAAATTGA TAAATATCAA TTATACCAGA
  GTCATATATT ATTTATTCTT TTTATTTCTC ATAGACTAG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss146472095	ENSMUSSNP3125245	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320187311	CHEV_1_190087695	CHEVERUD	SCREENING_POP	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs48521513					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:187996013 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1191	CpG island 1191	350 bp distal
Tssr368	transcription start site region 368	913 bp downstream
Tssr10680	transcription start site region 10680	1824 bp downstream
Tssr10681	transcription start site region 10681	1788 bp downstream
Ush2a	usherin	within coordinates