rs48521720 SNP Detail

Summary

• ID
  rs48521720
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58665191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GTGACAAGTG AGTGCGAGGA AACTTTGGGG TGGAGCATGC
  ATTTATAACC CAATTTTTTC GTTTCTTTTA AGAAGATTTG GTTTTATAGG TATATTGTCT
  R
  TATTTAAGTA TATCACACTG GTGTCCACCT GGTTCATGTG GAAGCCATAA CAATTCAGGT
  ACCCTGGAAC TTGTAGTTAC AGATGGTGGT GAGCTGCCAT G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss146566717	ENSMUSSNP1970837	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs48521720					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58665191 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11111	CpG island 11111	474 bp distal
Pnlip	pancreatic lipase	within coordinates
Tssr157271	transcription start site region 157271	1694 bp downstream
Tssr157272	transcription start site region 157272	1678 bp downstream
Tssr157273	transcription start site region 157273	531 bp downstream
Tssr157274	transcription start site region 157274	528 bp downstream
Tssr157275	transcription start site region 157275	496 bp downstream
Tssr157276	transcription start site region 157276	470 bp downstream
Tssr157277	transcription start site region 157277	237 bp downstream
Tssr157278	transcription start site region 157278	377 bp upstream
Tssr157279	transcription start site region 157279	394 bp upstream
Tssr157280	transcription start site region 157280	410 bp upstream
Tssr159961	transcription start site region 159961	1589 bp upstream