rs48523055 SNP Detail

Summary

• ID
  rs48523055
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:40519622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGAAAAT CAGTGTCTGG
  GGACCCAGTC CTGGGCGGTA CCAAACGCTT TGCCAAACCC GAAGTGAAAC AAAAAGTAGG
  TGTAAAAGTT CGCGCCTCTG TTGGAGACAG CCGCGCACCC CCTCCCTGCC TGCCGCGCAC
  CCCCTCCCTG CCTGCCGCGG TATTGGGCTG CACCCGGGGA CTTCGGGTGG GTCCCACTCA
  S
  GGCGCCTGGA CACTGTGTAG GGCGGGCTTC AGTTTGCCAC TGGTCAAGGA GCGGAGTCCC
  CACTGGGAGG GGCCTCCTTT GCTTCTGGGC TCACAGGATT TGAGTTCAAG GTAGCCCATA
  CTCTGGTGCT GTTCCTAGTT CCTGACCCCT ACCCCTGGGT CCCTGGGTGC GGGTCCCTGC
  GGTGCCAGAG ACACCTGCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147693575	ENSMUSSNP3509086	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48523055					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:40519622 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7065	CpG island 7065	within coordinates
Gm63080	predicted gene, 63080	74 bp upstream
Rr406269	regulatory region 406269	1640 bp proximal
Rr501588	regulatory region 501588	1181 bp distal
Rr501589	regulatory region 501589	618 bp distal
Rr501590	regulatory region 501590	117 bp distal
Rr501591	regulatory region 501591	1265 bp proximal
Tssr4586	transcription start site region 4586	924 bp downstream
Tssr131170	transcription start site region 131170	1335 bp downstream
Tssr131171	transcription start site region 131171	1305 bp downstream
Tssr131172	transcription start site region 131172	1222 bp downstream
Tssr131173	transcription start site region 131173	1172 bp downstream
Tssr131174	transcription start site region 131174	1144 bp downstream
Tssr131175	transcription start site region 131175	1001 bp downstream
Tssr131176	transcription start site region 131176	960 bp downstream
Tssr131177	transcription start site region 131177	905 bp downstream
Tssr131178	transcription start site region 131178	869 bp downstream
Tssr131179	transcription start site region 131179	1960 bp upstream
Zfpm2	zinc finger protein, multitype 2	within coordinates