rs48524254 SNP Detail

Summary

• ID
  rs48524254
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170977777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAGG TGCTCCAAGG AGCCCCTCCC
  Y
  CTACAATCCC TAAGTCCCCC CAAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss119995559	PARCsnp_1.11857	PARC_SEQ	INBRED	f	SNP			T	C
ss119997105	PARCsnp_1.00821	PARC_SEQ	INBRED	f	SNP			T	C
ss146154996	ENSMUSSNP5748987	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320116722	CHEV_1_173080339	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs48524254					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170977777 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1011	CpG island 1011	119 bp proximal
Mpz	myelin protein zero	505 bp upstream
Rr396555	regulatory region 396555	443 bp upstream
Rr423226	regulatory region 423226	within coordinates
Rr423227	regulatory region 423227	373 bp proximal
Rr423228	regulatory region 423228	516 bp proximal
Sdhc	succinate dehydrogenase complex, subunit C, integral membrane protein	within coordinates
Tssr14985	transcription start site region 14985	384 bp downstream