rs48524553 SNP Detail

Summary

• ID
  rs48524553
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126931322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTTTCTG AGACAGGCTT
  GGGGTTGCTT TTATAATTGC TGAAATTATC TCAAACTCTT GACCCCCCCC CCTGCCTCCA
  CCTCCCTAGT GCCCGCAACA CAGGCCTGCA CCACCGCACC TGACTTTATG CAGTCCTGGA
  AATCAGCTTG TATGCTAGGC AAGCACTCTA CCAACTGAGC CACAGCACTA GCCTAGTGAC
  R
  TTTTTTATTG TTGGTTTGGT TTGGTTTTGT GTAGACACAG TTTTTTTTCT GTGTAGCCCT
  GGCTTTCCTG AAACTCACTC TGTAGACCAG GCTGGCCTTG AACTCAGAGA TCCACCTGCC
  TCTCCCTCCT GAGTGCTGGG GTTACAGGTG AGCCACCATC CCACAGCTCT ACAGGAGGTT
  TTTTTTTTTT TGTTTTGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322451429	CHEV_7_134475664	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48524553					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126931322 () rs orientation: forward

Symbol	Name	Function Class
Itgal	integrin alpha L	within coordinates
Tssr69200	transcription start site region 69200	204 bp upstream
Tssr69201	transcription start site region 69201	1420 bp upstream
Tssr69202	transcription start site region 69202	1452 bp upstream
Tssr69203	transcription start site region 69203	1500 bp upstream
Tssr69204	transcription start site region 69204	1631 bp upstream